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Beardsley K, Roth NE, Thorne JH, Huber PR, McCoy MC.  2007.  Environmental Impacts of Urban Growth in California’s San Joaquin Valley. Policy White Paper for the John Muir Institute for the Environment.
Beardsley K, Thorne JH, Roth NE, Gao S, McCoy MC.  2009.  Assessing the influence of rapid urban growth and regional policies on biological resources. Landscape and Urban Planning. 93:172-183.
Beardsley K, Roth NE, McCoy MC.  2007.  Impacts of Different Growth Scenarios in the San Joaquin Valley of California. Proceedings International Conference on the Environment and Transportation (ICOET).
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Gao S, Johnston RA, McCoy MC.  2007.  Neighborhood economic and racial succession: Understanding this process of decline and its effects on residential choice in land use model. 10th International Conference on Computers in Urban Planning and Urban Management.
Gao S, Johnston RA, McCoy MC.  2007.  Neighborhood economic and racial succession: Understanding this process of decline and its effects on residential choice in land use models. 10th International Conference on Computers in Urban Planning and Urban Management.
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Hart BL, Hart LA, McCoy MC, Sarath CR.  2001.   Improving image derived vegetation maps with regression based distribution modeling. Animal Behaviour. 62:839-847.
Huber PR, Girvetz EH, Thorne JH, Hollander A, Quinn JF, McCoy MC.  2008.  Early biological mitigation needs assessment: Pleasant Grove pilot project .
Huber PR, Thorne JH, Williams A, Loeffler R, McCoy MC, Erickson G, Roth NE, Holgiun AJ, Boynton RM, Le NT.  2011.  A statewide Caltrans mitigation needs assessment in support of the Statewide Advance Mitigation Initiative (SAMI). International Conference on Ecology and Transportation.
Huber PR, Thorne JH, Roth NE, McCoy MC.  2011.  Assessing ecological condition, vulnerability, and restorability of a conservation network under alternative urban growth policies. Natural Areas Journal. 31:12.
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Johnston RA, Gao S, McCoy MC, Abraham J.  2007.  Interpreting Performance Indicators from A Statewide Integrated Transportation-Land Use Model. CUPUM.
Johnston RA, Gao S, McCoy MC, Hunt JD, Abraham J.  2007.  Integrated urban model for California: Policy evaluation capabilities. 11th World Conference on Transport Research.
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McCoy MC, Lubell M.  2005.  Policy Networks: Collaborative Land Use Planning in California. Association of European Schools of Planning.
McCoy MC, Quinn JF, Kalman NB.  2002.  Identifying environmental and agricultural values and opportunities for regional planning: a GIS approach. ESRI User Conference Proceedings.
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Schmidt EE, Thorne JH, Huber PR, Roth NE, Thompson E, McCoy MC.  2010.  A new method is used to evaluate the strategic value of Fresno County farmland. California Agriculture. 64:6.
Shook CD, Madison ME, Willett KW, Quinn JF, McCoy MC.  1999.  Applied Geographic Information Systems in Cooperative Natural Resource Projects: A California Example. ESRI International Users Conference.
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Thorne JH, McCoy MC, Hollander A, Roth NE, Quinn JF.  2005.  Regional analysis for transportation corridor planning. ICOET 2005.