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Botsford LW, MOLONEY CL, HASTINGS A, Largier JL, POWELL TM, HIGGINS K, Quinn JF.  1994.  THE INFLUENCE OF SPATIALLY AND TEMPORALLY VARYING OCEANOGRAPHIC CONDITIONS ON MEROPLANKTONIC METAPOPULATIONS. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY. 41:107--145. Abstract
Botsford LW, SMITH BD, Quinn JF.  1994.  BIMODALITY IN SIZE DISTRIBUTIONS - THE RED-SEA URCHIN STRONGYLOCENTROTUS-FRANCISCANUS AS AN EXAMPLE. ECOLOGICAL APPLICATIONS. 4:42--50. Abstract
BROWN KM, Quinn JF.  1988.  The Effect of wave action on growth in 3 species of intertidal gastropods. OECOLOGIA. 75:420--425.
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CisnerosMata MA, Botsford LW, Quinn JF.  1997.  Projecting viability of Totoaba macdonaldi, a population with unknown age-dependent variability. ECOLOGICAL APPLICATIONS. 7:968--980. Abstract
CONNOR VM, Quinn JF.  1984.  STIMULATION OF FOOD SPECIES GROWTH BY LIMPET MUCUS. SCIENCE. 225:843--844.
Cook RR, Quinn JF.  1995.  THE INFLUENCE OF COLONIZATION IN NESTED SPECIES SUBSETS. OECOLOGIA. 102:413--424. Abstract
Cook RR, Quinn JF.  1998.  An evaluation of randomization models for nested species subsets analysis. OECOLOGIA. 113:584--592. Abstract
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Girvetz EH, Thorne JH, Quinn JF, McCoy MC.  2008.  Early Biological Mitigation Needs Assessment: Elkhorn Slough Pilot Project.. Caltrans.
GROSBERG RK, Quinn JF.  1986.  THE GENETIC-CONTROL AND CONSEQUENCES OF KIN RECOGNITION BY THE LARVAE OF A COLONIAL MARINE INVERTEBRATE. NATURE. 322:456--459.
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Harrison S, Viers JH, Quinn JF.  2000.  Climatic and spatial patterns of diversity in the serpentine plants of California. Diversity & Distributions. 6:153-162.
Harrison S, Quinn JF.  1989.  CORRELATED ENVIRONMENTS AND THE PERSISTENCE OF METAPOPULATIONS. OIKOS. 56:293--298.
Harrison S, Quinn JF, BAUGHMAN JF, MURPHY DD, EHRLICH PR.  1991.  ESTIMATING THE EFFECTS OF SCIENTIFIC STUDY ON 2 BUTTERFLY POPULATIONS. AMERICAN NATURALIST. 137:227--243. Abstract
HAYWORTH AM, Quinn JF.  1990.  TEMPERATURE OF LIMPETS IN THE ROCKY INTERTIDAL ZONE - EFFECTS OF CAGING AND SUBSTRATUM. LIMNOLOGY AND OCEANOGRAPHY. 35:967--970.
Huber GP l EH, Thorne JH, Hollander A, Quinn JF, McCoy. MC.  2008.  Early biological mitigation needs assessment: Pleasant Grove pilot project. Caltrans.
Hunter JC, Willett KB, McCoy MC, Quinn JF, Keller KE.  1999.  Prospects for preservation and restoration of riparian forests in the Sacramento Valley, California, USA. ENVIRONMENTAL MANAGEMENT. 24:65--75. Abstract
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JUDGE ML, Quinn JF, WOLIN CL.  1988.  VARIABILITY IN RECRUITMENT OF BALANUS-GLANDULA (DARWIN, 1854) ALONG THE CENTRAL CALIFORNIA COAST. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY. 119:235--251.
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Kearney JE, Viers JH, Willet KB, McCoy MC, Quinn JF.  1999.  Using GIS to Improve Water Quality Reporting in California. ESRI International User Conference.
Keating KA, Quinn JF, Ivie MA, Ivie LL.  1998.  Estimating the effectiveness of further sampling in species inventories. ECOLOGICAL APPLICATIONS. 8:1239--1249. Abstract
Keating KA, Quinn JF.  1998.  Estimating species richness: the Michaelis-Menten model revisited. OIKOS. 81:411--416. Abstract
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LEIGH EG, PAINE RT, Quinn JF, SUCHANEK TH.  1987.  WAVE ENERGY AND INTERTIDAL PRODUCTIVITY. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 84:1314--1318.
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Meynard CN, Quinn JF.  2008.  Bird metacommunities in the temperate forests of South America: direct and indirect effects of vegetation structure, area and climate. Ecology. 89:981-990.
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North M, Boynton RM, Stine PA, Shipley KF, Underwood EC, Roth NE, Viers JH, Quinn JF.  2012.  Chapter 10. Geographic Information System Landscape Analysis Using GTR 220 Concepts. In Managing Sierra Nevada Forests..
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Quinn JF, ROBINSON GR.  1987.  THE EFFECTS OF EXPERIMENTAL SUBDIVISION ON FLOWERING PLANT DIVERSITY IN A CALIFORNIA ANNUAL GRASSLAND. JOURNAL OF ECOLOGY. 75:837--855.
Quinn JF, SIGNOR PW.  1989.  DEATH STARS, ECOLOGY, AND MASS EXTINCTIONS. ECOLOGY. 70:824--834.
Quinn JF, DUNHAM AE.  1983.  ON HYPOTHESIS-TESTING IN ECOLOGY AND EVOLUTION. AMERICAN NATURALIST. 122:602--617.