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Larsen EW, Fremier AK, Girvetz EH.  2006.  Modeling the effects of variable annual flow on river channel meander migration patterns, Sacramento River, California, USA. JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION. 42:1063--1075. Abstract
LEIGH EG, PAINE RT, Quinn JF, SUCHANEK TH.  1987.  WAVE ENERGY AND INTERTIDAL PRODUCTIVITY. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 84:1314--1318.
Li T, Shilling F, Thorne J, Schott H, Boynton R, Berry A.  In Press.  Fragmentation of China's Landscape by Roads and Urban Areas. Landscape Ecology.
Li T, Shilling F, Li F, Thorne JH, Schott H, Boynton R, Berry A.  0.  Fragmentation of China’s landscape by roads and land-use.
Ligare ST, Viers JH, Null SE, Rheinheimer DE, Mount JF.  2011.  Non-uniform changes to whitewater recreation in California's Sierra Nevada from regional climate warming. River Research and Applications. :n/a–n/a.
Lubell M, Henry A, McCoy M.  2007.  Collaborative Policy in an Ecology of Games. Midwest Political Science Association.
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Marchetti MP, Light T, Moyle PB, Viers JH.  2004.  Fish invasions in California watersheds: Testing hypotheses using landscape patterns. ECOLOGICAL APPLICATIONS. 14:1507--1525. Abstract
Maynard CN, Howell CA, Quinn JF.  2009.  Comparing alternative systematic conservation planning strategies against a politically-driven conservation plan. Biodiversity and Conservation. 18:3061-3083.
McCoy MC, Quinn JF, Kalman NB.  2002.  Identifying environmental and agricultural values and opportunities for regional planning: a GIS approach. ESRI User Conference Proceedings.
McCoy MC, Lubell M.  2005.  Policy Networks: Collaborative Land Use Planning in California. Association of European Schools of Planning.
Meese RJ, Simmons SB.  2010.  Safe and effective methods for trapping and color banding tricolored blackbirds in the Central Valley of California.. California Fish and Game. 96:23-35.
Meese RJ, Neronov VM, Alestchenko GM, Ruggiero M.  2003.  Rapid acquisition and dissemination of standardized biological inventories from Russian Biosphere Reserves. BIODIVERSITY AND CONSERVATION. 12:1421--1429. Abstract
Meese RJ.  2009.  An efficient and effective method for sealing Darvic color bands.. North American Bird Bander. 34:175-178.
Meese RJ.  1993.  EFFECTS OF PREDATION BY BIRDS ON GOOSENECK BARNACLE POLLICIPES-POLYMERUS SOWERBY DISTRIBUTION AND ABUNDANCE. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY. 166:47--64. Abstract
Meese RJ.  2013.  Chronic low reproductive success of the colonial Tricolored Blackbird from 2006 to 2011.. Western Birds. 44:98-113.
Meese RJ, TOMICH PA.  1992.  DOTS ON THE ROCKS - A COMPARISON OF PERCENT COVER ESTIMATION METHODS. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY. 165:59--73. Abstract
Meese RJ.  2012.  Cattle egret predation causing reproductive failures of nesting Tricolored Blackbirds.. California Fish and Game. 98:47-50.
Mehta VK, Rheinheimer DE, Yates D, Purkey DR, Viers JH, Young CA, Mount JF.  2011.  Potential impacts on hydrology and hydropower production under climate warming of the Sierra Nevada. Journal of Water and Climate Change. 2:29-43.
Merenlender AM, Brooks C, Shabazian D, Gao S, Johnston RA.  2005.  Forecasting exurban development to evaluate the influence of land-use policies on wildland and farmland conservation. Journal of Conservation Planning. 1
Meynard CN, Quinn JF.  2007.  Predicting species distributions: a critical comparison of the most common statistical models using artificial species.. Journal of Biogeography. 34:1455-1469.
Meynard CN, Quinn JF.  2008.  Bird metacommunities in the temperate forests of South America: direct and indirect effects of vegetation structure, area and climate. Ecology. 89:981-990.
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North M, Boynton RM, Stine PA, Shipley KF, Underwood EC, Roth NE, Viers JH, Quinn JF.  2012.  Chapter 10. Geographic Information System Landscape Analysis Using GTR 220 Concepts. In Managing Sierra Nevada Forests..
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Olson DM, Dinerstein E, Wikramanayake E, Burgess N, Powell G, Underwood EC, D’Amico J, Itoua I, Strand H, Morrison J et al..  2001.  Terrestrial ecoregions of the world: a new map of life on earth. BioScience. 51(11):933-938.
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Parks BO, Fornwall MD, eds. James F. Quinn.  2004.  First NBII Biodiversity Modeling Workshop: Results and Recommendations. Proceedings of NBII Biodiversity Modeling Workshop, July 27-31, 2003, Maui, HI.. U. S. Geological Survey, Center for Biological Informatics. .
Pettler A, Erickson G, Quinn JF, Meese RJ, Shilling F.  2007.  An Analytical Framework for Wildlife Crossing Policy in California. ICOET 2007 -- Little Rock, Arkansas.