Girvetz EH, Thorne JH, Berry AM, Jaeger JAG .  2008.  Integration of landscape fragmentation analysis into regional planning: A statewide multi-scale case study from California, USA. Landscape and Urban Planning. (in press)
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Huber PR, Roth NE, Beardsley K, Thorne JH, McCoy MC, Meade R .  2007.  Potential impacts of urban growth on an ecological network in the San Joaquin Valley. Association for American Geographer’s (AAG) .
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Thorne JH, Girvetz EH, McCoy M .  2007.  A multi-scale and context sensitive state-wide environmental mitigation planning tool for transportation projects in California. Proceedings International Conference on the Environment and Transportation (ICOET).
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Beardsley K, Roth NE, Thorne JH, Huber PR, McCoy MC .  2007.  Environmental Impacts of Urban Growth in California’s San Joaquin Valley. Policy White Paper for the John Muir Institute for the Environment.
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Girvetz EH, Thorne JH, Jaeger JAG .  2007.  Comment on "Roadless Space of the Conterminous United States". Science. 5854 Abstract
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Thorne JH, O Brien J, Forister ML, Shapiro AM .  2006.  Building phenological models from presence/absence data for a butterfly fauna. ECOLOGICAL APPLICATIONS. 16:1842--1853. Abstract
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Thorne JH, Gao SY, Hollander AD, Kennedy JA, McCoy M, Johnston RA, Quinn JF .  2006.  Modeling potential species richness and urban buildout to identify mitigation sites along a California highway. TRANSPORTATION RESEARCH PART D-TRANSPORT AND ENVIRONMENT. 11:277--291. Abstract
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Schwartz MW, Thorne JH, Viers JH .  2006.  Biotic homogenization of the California flora in urban and urbanizing regions. BIOLOGICAL CONSERVATION. 127:282--291. Abstract
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Thorne JH, Cameron D, Quinn JF .  2006.  A conservation design for the central coast of California and the evaluation of mountain lion as an umbrella species. NATURAL AREAS JOURNAL. 26:137--148. Abstract
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Viers J, Thorne J, Quinn J .  2006.  CalJep: A Spatial Distribution Database of CalFlora and Jepson. San Francisco Estuary & Watershed Science. 4(1):1.
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Vander Zanden MJ, Olden JD, Thorne JH, Mandrak NE .  2004.  Predicting occurrences and impacts of smallmouth bass introductions in north temperate lakes. ECOLOGICAL APPLICATIONS. 14:132--148. Abstract
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Thorne JH, Kennedy JA, Keeler-Wolf T, Quinn JF, Menke J, McCoy M .  2004.  A New Vegetation Map of Napa County Using the Manual of California Vegetation Classification and its Comparison to Other Digital Vegetation Map. Madroño . 51(4):343-363.
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