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Underwood EC, Hollander AD, Quinn JF.  Submitted.  Geospatial Tools for Identifying and Managing Invasive Plants, Invasive Plant Species. Invasive Plant Ecology.
Thorne JH, Huber P, Girvetz E, Quinn J, McCoy M.  Submitted.  Integration of regional mitigation assessment and conservation planning.. Ecology and Society.
2011
Thode A, van Wagtendonk J, Miller JD, Quinn JF.  2011.  Quantifying the Fire Regime Distributions for Severity in Yosemite National Park, California, USA. International Journal of Wildland Fire. 20:223-239.
2010
Waetjen DP, Thorne JH, Hollander AH, Shapiro AM, Quinn JF.  2010.  The Butterfly Effect: An Approach to Web-Based Scientific Data Distribution and Management with Linkages to Climate Data and the Semantic Web. Abstract
Underwood EC, Quinn JF.  2010.  Response of ants and spiders to prescribed fire in oak woodlands of California. Journal of Insect Conservation. 14:359-366.
Underwood EC, Viers JH, Quinn JF, North M.  2010.  Using topography to meet wildlife and fuels treatment objectives in fire-suppressed landscapes. Environmental Management. 46:809-819.
2009
Maynard CN, Howell CA, Quinn JF.  2009.  Comparing alternative systematic conservation planning strategies against a politically-driven conservation plan. Biodiversity and Conservation. 18:3061-3083.
2008
Meynard CN, Quinn JF.  2008.  Bird metacommunities in the temperate forests of South America: direct and indirect effects of vegetation structure, area and climate. Ecology. 89:981-990.
Girvetz EH, Thorne JH, Quinn JF, McCoy MC.  2008.  Early Biological Mitigation Needs Assessment: Elkhorn Slough Pilot Project.. Caltrans.
Huber GP l EH, Thorne JH, Hollander A, Quinn JF, McCoy. MC.  2008.  Early biological mitigation needs assessment: Pleasant Grove pilot project. Caltrans.
2007
Pettler A, Erickson G, Quinn JF, Meese RJ, Shilling F.  2007.  An Analytical Framework for Wildlife Crossing Policy in California. ICOET 2007 -- Little Rock, Arkansas.
Meynard CN, Quinn JF.  2007.  Predicting species distributions: a critical comparison of the most common statistical models using artificial species.. Journal of Biogeography. 34:1455-1469.
2006
Thorne JH, Gao SY, Hollander AD, Kennedy JA, McCoy M, Johnston RA, Quinn JF.  2006.  Modeling potential species richness and urban buildout to identify mitigation sites along a California highway. TRANSPORTATION RESEARCH PART D-TRANSPORT AND ENVIRONMENT. 11:277--291. Abstract
Thorne JH, Cameron D, Quinn JF.  2006.  A conservation design for the central coast of California and the evaluation of mountain lion as an umbrella species. NATURAL AREAS JOURNAL. 26:137--148. Abstract
Viers JH, Thorne JH, Quinn JF.  2006.  CalJep: A Spatial Distribution Database of CalFlora and Jepson. San Francisco Estuary & Watershed Science. 4(1):1.
2005
Thorne JH, McCoy MC, Hollander A, Roth NE, Quinn JF.  2005.  Regional analysis for transportation corridor planning. ICOET 2005.
Johnson J, Viers JH, Deas M, Quinn J, Roth NE.  2005.  Sunrise on the Klamath: Determining Topographic Sunrise and Sunset. ESRI Users Conference.
2004
Thorne JH, Kennedy JA, Keeler-Wolf T, Quinn JF, Menke J, McCoy M.  2004.  A New Vegetation Map of Napa County Using the Manual of California Vegetation Classification and its Comparison to Other Digital Vegetation Map. Madroño . 51(4):343-363.
Parks BO, Fornwall MD, eds. James F. Quinn.  2004.  First NBII Biodiversity Modeling Workshop: Results and Recommendations. Proceedings of NBII Biodiversity Modeling Workshop, July 27-31, 2003, Maui, HI.. U. S. Geological Survey, Center for Biological Informatics. .
2003
Viers JH, Ramirez CM, Quinn JF.  2003.  On the uses of hyperspectral data analysis and watershed analytical methods to evaluate the extent of riparian vegetation and habitat in the Navarro River, California.
2002
McCoy MC, Quinn JF, Kalman NB.  2002.  Identifying environmental and agricultural values and opportunities for regional planning: a GIS approach. ESRI User Conference Proceedings.
Viers JH, Sailer CT, Ramirez CM, Quinn JF, Johnson ML, Green RO.  2002.  An Integrated Approach to the Discrimination of Riparian Vegetation in the Navarro River Watershed. Eleventh JPL Airborne Earth Science Workshop.
2000
Quinn JB, Quinn JF.  2000.  Forging environmental markets. ISSUES IN SCIENCE AND TECHNOLOGY. 16:45--52.
Harrison S, Viers JH, Quinn JF.  2000.  Climatic and spatial patterns of diversity in the serpentine plants of California. Diversity & Distributions. 6:153-162.
Viers JH, Hoyos RV, Mullins JC, Lehmer E, Byrne MS, McCoy MC, Quinn JF.  2000.  Watershed Analysis Tool for Environmental Resources: GIS Technology in the New Millennium. ESRI International User Conference.