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LEIGH, EG, PAINE RT, Quinn JF, SUCHANEK TH.  1987.  WAVE ENERGY AND INTERTIDAL PRODUCTIVITY. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 84:1314--1318.
Viers, JH, Hoyos RV, Mullins JC, Lehmer E, Byrne MS, McCoy MC, Quinn JF.  2000.  Watershed Analysis Tool for Environmental Resources: GIS Technology in the New Millennium. ESRI International User Conference.
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JUDGE, ML, Quinn JF, WOLIN CL.  1988.  VARIABILITY IN RECRUITMENT OF BALANUS-GLANDULA (DARWIN, 1854) ALONG THE CENTRAL CALIFORNIA COAST. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY. 119:235--251.
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Kearney, JE, Viers JH, Willet KB, McCoy MC, Quinn JF.  1999.  Using GIS to Improve Water Quality Reporting in California. ESRI International User Conference.
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HAYWORTH, AM, Quinn JF.  1990.  TEMPERATURE OF LIMPETS IN THE ROCKY INTERTIDAL ZONE - EFFECTS OF CAGING AND SUBSTRATUM. LIMNOLOGY AND OCEANOGRAPHY. 35:967--970.
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CONNOR, VM, Quinn JF.  1984.  STIMULATION OF FOOD SPECIES GROWTH BY LIMPET MUCUS. SCIENCE. 225:843--844.
STOHLGREN, TJ, Quinn JF, Ruggiero M, WAGGONER GS.  1995.  STATUS OF BIOTIC INVENTORIES IN US NATIONAL-PARKS. BIOLOGICAL CONSERVATION. 71:97--106. Abstract
Wing, SR, Largier JL, Botsford LW, Quinn JF.  1995.  SETTLEMENT AND TRANSPORT OF BENTHIC INVERTEBRATES IN AN INTERMITTENT UPWELLING REGION. LIMNOLOGY AND OCEANOGRAPHY. 40:316--329. Abstract
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Hunter, JC, Willett KB, McCoy MC, Quinn JF, Keller KE.  1999.  Prospects for preservation and restoration of riparian forests in the Sacramento Valley, California, USA. ENVIRONMENTAL MANAGEMENT. 24:65--75. Abstract
CisnerosMata, MA, Botsford LW, Quinn JF.  1997.  Projecting viability of Totoaba macdonaldi, a population with unknown age-dependent variability. ECOLOGICAL APPLICATIONS. 7:968--980. Abstract
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Viers, JH, Ramirez CM, Quinn JF.  2003.  On the uses of hyperspectral data analysis and watershed analytical methods to evaluate the extent of riparian vegetation and habitat in the Navarro River, California.
Quinn, JF.  1987.  ON THE STATISTICAL DETECTION OF CYCLES IN EXTINCTIONS IN THE MARINE FOSSIL RECORD. PALEOBIOLOGY. 13:465--478.
Quinn, JF, DUNHAM AE.  1983.  ON HYPOTHESIS-TESTING IN ECOLOGY AND EVOLUTION. AMERICAN NATURALIST. 122:602--617.
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Viers, JH, McCoy MC, Quinn JF, Johnson ML.  1999.  Nonpoint Source Pollution Modeling in the North Coast of California Within a GIS: A Predictive Screening Tool for Watershed Management. ESRI International User Conference.
Thorne, JH, Kennedy JA, Keeler-Wolf T, Quinn JF, Menke J, McCoy M.  2004.  A New Vegetation Map of Napa County Using the Manual of California Vegetation Classification and its Comparison to Other Digital Vegetation Map. Madroño . 51(4):343-363.
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Thorne, JH, Gao SY, Hollander AD, Kennedy JA, McCoy M, Johnston RA, Quinn JF.  2006.  Modeling potential species richness and urban buildout to identify mitigation sites along a California highway. TRANSPORTATION RESEARCH PART D-TRANSPORT AND ENVIRONMENT. 11:277--291. Abstract
Quinn, JF.  1983.  MASS EXTINCTIONS IN THE FOSSIL RECORD. SCIENCE. 219:1239--1240.
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ROBINSON, GR, Quinn JF, STANTON ML.  1995.  INVASIBILITY OF EXPERIMENTAL HABITAT ISLANDS IN A CALIFORNIA WINTER ANNUAL GRASSLAND. ECOLOGY. 76:786--794. Abstract
Viers, JH, Sailer CT, Ramirez CM, Quinn JF, Johnson ML, Green RO.  2002.  An Integrated Approach to the Discrimination of Riparian Vegetation in the Navarro River Watershed. Eleventh JPL Airborne Earth Science Workshop.
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Botsford, LW, MOLONEY CL, HASTINGS A, Largier JL, POWELL TM, HIGGINS K, Quinn JF.  1994.  THE INFLUENCE OF SPATIALLY AND TEMPORALLY VARYING OCEANOGRAPHIC CONDITIONS ON MEROPLANKTONIC METAPOPULATIONS. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY. 41:107--145. Abstract
Cook, RR, Quinn JF.  1995.  THE INFLUENCE OF COLONIZATION IN NESTED SPECIES SUBSETS. OECOLOGIA. 102:413--424. Abstract
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Quinn, JF, Wing SR, Botsford LW.  1993.  HARVEST REFUGIA IN MARINE INVERTEBRATE FISHERIES - MODELS AND APPLICATIONS TO THE RED-SEA URCHIN, STRONGYLOCENTROTUS-FRANCISCANUS. AMERICAN ZOOLOGIST. 33:537--550. Abstract
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GROSBERG, RK, Quinn JF.  1986.  THE GENETIC-CONTROL AND CONSEQUENCES OF KIN RECOGNITION BY THE LARVAE OF A COLONIAL MARINE INVERTEBRATE. NATURE. 322:456--459.
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Quinn, JB, Quinn JF.  2000.  Forging environmental markets. ISSUES IN SCIENCE AND TECHNOLOGY. 16:45--52.
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ROBINSON, GR, Quinn JF.  1988.  EXTINCTION, TURNOVER AND SPECIES-DIVERSITY IN AN EXPERIMENTALLY FRAGMENTED CALIFORNIA ANNUAL GRASSLAND. OECOLOGIA. 76:71--82.