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Johnston, RA, McCoy M, Kirn M, Fell M.  2004.  Streamlining the National Environmental Policy act process through cooperative local-state-federal transportation and land use planning. ENERGY AND ENVIRONMENTAL CONCERNS 2004. :135--143. Abstract
Huber, PR, Roth N, McCoy M, Meade R.  2006.  San Joaquin Valley conservation opportunities: a collaborative regional planning effort in California. Natural Areas Conference.
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Thorne, JH, Kennedy JA, Keeler-Wolf T, Quinn JF, Menke J, McCoy M.  2004.  A New Vegetation Map of Napa County Using the Manual of California Vegetation Classification and its Comparison to Other Digital Vegetation Map. Madroño . 51(4):343-363.
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Thorne, JH, Girvetz EH, McCoy M.  2007.  A multi-scale and context sensitive state-wide environmental mitigation planning tool for transportation projects in California. Proceedings International Conference on the Environment and Transportation (ICOET).
Thorne, JH, Gao SY, Hollander AD, Kennedy JA, McCoy M, Johnston RA, Quinn JF.  2006.  Modeling potential species richness and urban buildout to identify mitigation sites along a California highway. TRANSPORTATION RESEARCH PART D-TRANSPORT AND ENVIRONMENT. 11:277--291. Abstract
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Thorne, JH, Huber P, Girvetz E, Quinn J, McCoy M.  Submitted.  Integration of regional mitigation assessment and conservation planning.. Ecology and Society.
Beardsley, K, Thorne JH, Roth NE, McCoy M.  Submitted.  Impact of Rapid Human Population Growth on Biological Resources in the San Joaquin Valley of California. Landscape and Urban Planning.