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Thorne, JH, Gao SY, Hollander AD, Kennedy JA, McCoy M, Johnston RA, Quinn JF.  2006.  Modeling potential species richness and urban buildout to identify mitigation sites along a California highway. TRANSPORTATION RESEARCH PART D-TRANSPORT AND ENVIRONMENT. 11:277--291. Abstract
Thorne, JH, Girvetz EH, McCoy M.  2007.  A multi-scale and context sensitive state-wide environmental mitigation planning tool for transportation projects in California. Proceedings International Conference on the Environment and Transportation (ICOET).
Thorne, JH, Kennedy JA, Keeler-Wolf T, Quinn JF, Menke J, McCoy M.  2004.  A New Vegetation Map of Napa County Using the Manual of California Vegetation Classification and its Comparison to Other Digital Vegetation Map. Madroño . 51(4):343-363.
Thorne, JH, Huber P, Girvetz E, Quinn J, McCoy M.  Submitted.  Integration of regional mitigation assessment and conservation planning.. Ecology and Society.
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Johnston, RA, McCoy M, Kirn M, Fell M.  2004.  Streamlining the National Environmental Policy act process through cooperative local-state-federal transportation and land use planning. ENERGY AND ENVIRONMENTAL CONCERNS 2004. :135--143. Abstract
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Huber, PR, Roth N, McCoy M, Meade R.  2006.  San Joaquin Valley conservation opportunities: a collaborative regional planning effort in California. Natural Areas Conference.
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Beardsley, K, Thorne JH, Roth NE, McCoy M.  Submitted.  Impact of Rapid Human Population Growth on Biological Resources in the San Joaquin Valley of California. Landscape and Urban Planning.