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Dinerstein, E, Powell G, Olson DM, Wikramanayake E, Abell R, Loucks CJ, Underwood EC, Allnut T, Wettengel W, Ricketts TH et al..  2000.  A workbook for conducting biological assessments and developing biodiversity visions for ecoregion-based conservation: Part I, Terrestrial Ecoregions..
LEIGH, EG, PAINE RT, Quinn JF, SUCHANEK TH.  1987.  WAVE ENERGY AND INTERTIDAL PRODUCTIVITY. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 84:1314--1318.
Viers, JH, Hoyos RV, Mullins JC, Lehmer E, Byrne MS, McCoy MC, Quinn JF.  2000.  Watershed Analysis Tool for Environmental Resources: GIS Technology in the New Millennium. ESRI International User Conference.
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Hijmans, RJ, Cameron SE, Parra JL, Jones PG, Jarvis A.  2005.  Very high resolution interpolated climate surfaces for global land areas. INTERNATIONAL JOURNAL OF CLIMATOLOGY. 25:1965--1978. Abstract
Thorne, JH, Morgan BJ, and J. A K.  In Press.  Vegetation Change over 60 Years in the Central Sierra Nevada. Madroño.
JUDGE, ML, Quinn JF, WOLIN CL.  1988.  VARIABILITY IN RECRUITMENT OF BALANUS-GLANDULA (DARWIN, 1854) ALONG THE CENTRAL CALIFORNIA COAST. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY. 119:235--251.
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Kearney, JE, Viers JH, Willet KB, McCoy MC, Quinn JF.  1999.  Using GIS to Improve Water Quality Reporting in California. ESRI International User Conference.
Ghneim, GS, Viers JH, Chomel BB, Kass PH, Descollonges DA, Johnson ML.  2007.  Use of a case-control study and geographic information systems to determine environmental and demographic risk factors for canine leptospirosis. VETERINARY RESEARCH. 38:37--50. Abstract
Johnston, RA, Shabazian D, Gao S.  2003.  UPlan: A versatile urban growth model for transportation planning. Transportation Research Record. 183
Walker, T, Gao S, Johnston RA.  2007.  UPlan: A discrete choice, supply-side, land use planning model. Transportation Research Record.
Johnston, RA, Shabazian DR, Gao SY.  2003.  UPlan - A versatile urban growth model for transportation planning. TRAVEL DEMAND AND LAND USE 2003. :202--209. Abstract
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Underwood, EC, Ustin SL, Strand H, Höft R, Strittholt J, Miles L, Horning N, Fosnight E.  2007.  Trends in Invasive Alien Species. Sourcebook on Remote Sensing and Biodiversity Indicators. :201.
Underwood, EC, Viers JH, Klausmeyer KR, Cox RL, Shaw MR.  2009.  Threats and biodiversity in the mediterranean biome. Diversity and Distributions. 15:188-197.
Olson, DM, Dinerstein E, Wikramanayake E, Burgess N, Powell G, Underwood EC, D’Amico J, Itoua I, Strand H, Morrison J et al..  2001.  Terrestrial ecoregions of the world: a new map of life on earth. BioScience. 51(11):933-938.
Burgess, N, Hales J D’A, Underwood E, Dinerstein E.  2004.  Terrestrial Ecoregions of Africa and Madagascar. :644.
Ahearn, DS, Sheibley RW, Dahlgren RA, Keller KE.  2004.  Temporal dynamics of stream water chemistry in the last free-flowing river draining the western Sierra Nevada, California. JOURNAL OF HYDROLOGY. 295:47--63. Abstract
HAYWORTH, AM, Quinn JF.  1990.  TEMPERATURE OF LIMPETS IN THE ROCKY INTERTIDAL ZONE - EFFECTS OF CAGING AND SUBSTRATUM. LIMNOLOGY AND OCEANOGRAPHY. 35:967--970.
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Johnson, J, Viers JH, Deas M, Quinn J, Roth N.  2005.  Sunrise on the Klamath: Determining Topographic Sunrise and Sunset. ESRI Users Conference.
Johnston, RA, McCoy M, Kirn M, Fell M.  2004.  Streamlining the National Environmental Policy act process through cooperative local-state-federal transportation and land use planning. ENERGY AND ENVIRONMENTAL CONCERNS 2004. :135--143. Abstract
CONNOR, VM, Quinn JF.  1984.  STIMULATION OF FOOD SPECIES GROWTH BY LIMPET MUCUS. SCIENCE. 225:843--844.
STOHLGREN, TJ, Quinn JF, Ruggiero M, WAGGONER GS.  1995.  STATUS OF BIOTIC INVENTORIES IN US NATIONAL-PARKS. BIOLOGICAL CONSERVATION. 71:97--106. Abstract
Davidson, C.  2002.  Spatial tests of the pesticide drift, habitat destruction, UV-B and climate change hypotheses for California amphibian declines. Conservation Biology. (16):13.
Thorne, JH, Viers JH, Price J, Stoms. DM.  Submitted.  Spatial patterns of endemic plants in California. Natural Areas Journal.
Gao, S, Johnston RA.  2005.  The spatial mismatch hypothesis: Critique of research and proposed methods. Transportation Research Board 84th Annual Meeting.
Foley, JE, Sokolow SH, Girvetz E, Foley CW, Foley P.  2005.  Spatial epidemiology of Caribbean yellow band syndrome in Montastrea spp. coral in the eastern Yucatan, Mexico. HYDROBIOLOGIA. 548:33--40. Abstract