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Submitted
Thorne, JH, Huber P, Girvetz E, Quinn J, McCoy M.  Submitted.  Integration of regional mitigation assessment and conservation planning.. Ecology and Society.
Underwood, EC, Hollander AD, Quinn JF.  Submitted.  Geospatial Tools for Identifying and Managing Invasive Plants, Invasive Plant Species. Invasive Plant Ecology.
Cox, RL, Underwood EC.  Submitted.  The importance of conserving biodiversity outside of protected areas in mediterranean systems. PLoS One.
In Press
Li, T, Shilling F, Thorne J, Schott H, Boynton R, Berry A.  In Press.  Fragmentation of China's Landscape by Roads and Urban Areas. Landscape Ecology.
Thorne, JH, Girvetz EH, McCoy. M.  In Press.  Evaluating aggregate terrestrial impacts of road construction projects for advanced regional mitigation.. Environmental Management.
Thorne, JH, Morgan BJ, Kennedy JA.  In Press.  Vegetation Change over 60 Years in the Central Sierra Nevada. Madroño.
2011
Mehta, VK, Rheinheimer DE, Yates D, Purkey DR, Viers JH, Young CA, Mount JF.  2011.  Potential impacts on hydrology and hydropower production under climate warming of the Sierra Nevada. Journal of Water and Climate Change. 2:29-43.
Viers, JH, Rheinheimer DE.  2011.  Freshwater conservation options for a changing climate in Californias Sierra Nevada. Marine and Freshwater Research . 62:266–278.
Ligare, ST, Viers JH, Null SE, Rheinheimer DE, Mount JF.  2011.  Non-uniform changes to whitewater recreation in California's Sierra Nevada from regional climate warming. River Research and Applications. :n/a–n/a.
Viers, JH.  2011.  Hydropower Relicensing and Climate Change. JAWRA Journal of the American Water Resources Association. :no–no.
Thode, A, van Wagtendonk J, Miller JD, Quinn JF.  2011.  Quantifying the Fire Regime Distributions for Severity in Yosemite National Park, California, USA. International Journal of Wildland Fire. 20:223-239.
2010
Underwood, EC, Viers JH, Quinn JF, North M.  2010.  Using topography to meet wildlife and fuels treatment objectives in fire-suppressed landscapes. Environmental Management. 46:809-819.
Underwood, EC, Quinn JF.  2010.  Response of ants and spiders to prescribed fire in oak woodlands of California. Journal of Insect Conservation. 14:359-366.
Waetjen, DP, Thorne JH, Hollander AH, Shapiro AM, Quinn JF.  2010.  The Butterfly Effect: An Approach to Web-Based Scientific Data Distribution and Management with Linkages to Climate Data and the Semantic Web. Abstract
2009
Beardsley, K, Thorne JH, Roth NE, Gao S, McCoy MC.  2009.  Assessing the influence of rapid urban growth and regional policies on biological resources. Landscape and Urban Planning. 93:172-183.
Underwood, EC.  2009.  Evaluating conservation spending for species return: A retrospective analysis in California. Conservation Letters. :130-137.
Underwood, EC, Christian CE.  2009.  Consequences of Prescribed Fire and Grazing on Grassland Ant Communities. Environmental Entomology. 38:325-332.
Underwood, EC, Viers JH, Klausmeyer KR, Cox RL, Shaw MR.  2009.  Threats and biodiversity in the mediterranean biome. Diversity and Distributions. 15:188-197.
Underwood, EC, Klausmeyer KR, Cox RL, Busby SM, Morrison SA, Shaw MR.  2009.  Expanding the global protected areas network to save the imperiled mediterranean biome. Conservation Biology. 23:43-52.
Maynard, CN, Howell CA, Quinn JF.  2009.  Comparing alternative systematic conservation planning strategies against a politically-driven conservation plan. Biodiversity and Conservation. 18:3061-3083.
Thorne, JH, Viers JH, Price J, Stoms DM.  2009.  Spatial Patterns of Endemic Plants in California. Natural Areas Journal. 29:344-366.
Young, CA, Escobar-Arias MI, Fernandes M, Joyce B, Kiparsky M, Mount JF, Mehta VK, Purkey D, Viers JH, Yates D.  2009.  Modeling the Hydrology of Climate Change in California’s Sierra Nevada for Subwatershed Scale Adaptation. JAWRA Journal of the American Water Resources Association. 45:1409–1423.
2008
Underwood, EC, Shaw MR, Wilson KA, Kareiva P, Klausmeyer KA, McBride MF, Bode M, Morrison SA, Hoekstra JM, Possingham HP.  2008.  Protecting Biodiversity When Money Matters: Maximizing Return on Investment.. PLoS One. 3 Abstract
Underwood, EC, Cox RL, Shaw MR, Klausmeyer KR, Morrison SA.  2008.  A conservation assessment of the Mediterranean Biome: threats, trends and gaps. Medecos XI The International Mediterranean Ecosystems Conference.
Thorne, J, Bjorkman J, Boynton R, Thrasher S.  2008.  Observed Changes in Vegetation Patterns in California. California Energy Commission’s Second Annual Climate Change Conference.